Install Xcode Command Line Tools with the following command in the Terminal: xcode-select -installįollow the prompts and accept the license agreement. The Xcode Command Line Tools are provided by Apple and contain the necessary tools for compiling code and installing other software. Many of the following steps for El Capitan were derived from her post. If you are interested in configuring Yosemite for biocomputing instead, see this post by Stephanie Spielman. This guide describes the steps I took to configure El Capitan for biocomputing. To cleanly rid my laptop of MacPorts, I started with a fresh copy of El Capitan. I did this for several reasons, but mostly because I was thoroughly frustrated with MacPorts and wanted to switch to Homebrew (more on that later). I recently wiped my Macbook Pro and reinstalled Mac OS X El Capitan. So feel free to use this guide to set up macOS Sierra for biocomputing. Update (3/26/17): After six months of using macOS Sierra, I can state confidently that all instructions discussed below hold true for both El Capitan and Sierra. Update (3/28/18): This post has been updated to reflect changes in how scientific software is distributed in Homebrew.
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